Package 'Certara.VPCResults'

A ggplot2 theme for Certara.

Description

A ggplot2 theme for Certara.

Usage

theme_certara(
  base_size = 11,
  base_family = "",
  base_line_size = base_size/22,
  base_rect_size = base_size/22,
  grid = c("none", "horizontal", "both")
)

Arguments

base_size	base font size, given in pts.
base_family	base font family
base_line_size	base size for line elements
base_rect_size	base size for rect elements
grid	Which grid lines should appear? Horizontal only, both horizontal and vertical, or none (default). continuous_scale().

Details

There are 3 variants of the theme: no grid theme_certara(), full grid theme_certara(grid = "both"), and horizontal grid lines only theme_certara(grid = "horizontal").

Value

An object of class theme().

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Shiny GUI to parameterize Visual Predictive Check (VPC)

Description

Use tidyvpc package to parameterize VPC from Shiny GUI and customize plot using ggplot2. Code generation functionality allows you to reproduce tidyvpc object and ggplot2 plot in your local R session via R script saved to your working directory.

Usage

vpcResultsUI(
  observed,
  simulated,
  ObsName = NULL,
  vpc.type = c("continuous", "categorical"),
  tagged = NULL,
  settings = NULL,
  ...
)

Arguments

observed	Observed input data.
simulated	Simulated input data.
ObsName	Optional character value specifiying the name of the observed dependent variable (e.g., ObsName).
vpc.type	Character value specifying type of VPC.
tagged	A list of tagged VPC's or model diagnostics created from previous Certara.VPC or Certara.ModelResults session.
settings	A list of plot customization settings used in previous Certara.VPC or Certara.ModelResults session.
...	Arguments for initiation from Pirana.

Value

If interactive(), returns a list of tagged diagnostics from the Shiny application, otherwise returns TRUE.

Examples

if (interactive()) {
vpcResultsUI(tidyvpc::obs_data, tidyvpc::sim_data)
}

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Write code to R script from tagged diagnostics

Description

Use this function to write code to R script from diagnostics tagged in Certara's VPC Results Shiny Application.

Usage

write_code(tagged, file)

Arguments

tagged	List of tagged objects from returned from VPCResultsUI().
file	Character specifying path of output file. If missing, it will be saved as code.R in working directory.

Value

Returns NULL after writing to file.

Examples

if (interactive()) {
 tagged_diagnostics <-
   vpcResultsUI(tidyvpc::obs_data, tidyvpc::sim_data)

 write_code(tagged_diagnostics, "tagged_vpc.R")
}

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